wasserth/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
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SDKs, agent skills, IDE extensions, and reference pipelines from Backblaze Labs. All open source.
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Where it stands
Rank, growth pace and release cadence relative to everything GStars tracks.
1 release in the last 90 days, the latest 56 days ago, with 39 contributors on GitHub.
Gained 20% fewer stars in the last 90 days than in the 90 days before.
Use Cases & Benefits
- Segments over 100 major anatomical structures in CT and MR images using pretrained deep learning models.
- Offers robust, multi-task segmentation trained on diverse datasets, supporting many anatomical subtasks and modalities.
- Use for automated anatomical segmentation in medical imaging research to quantify organ volumes and structures.
- Use for integrating into clinical workflows or FDA-approved products requiring detailed anatomical segmentation.
- Use for developing and validating new segmentation models by retraining or extending with custom nnU-Net models.
Should you depend on it?
License terms, project hygiene and risks, from GitHub metadata and GStars' snapshots.
License
Apache 2.0
Permissive: commercial use, modification and redistribution are allowed with attribution; includes an explicit patent grant from contributors.
Community files
- README: present
- Contributing guide: present
Watch-outs
No watch-outs from GStars' checks.
General guidance from repository metadata, not legal advice. How we score
From the README
Tool for segmentation of most major anatomical structures in any CT or MR image. It was trained on a wide range of different CT and MR images (different scanners, institutions, protocols,...) and therefore works well on most images. A large part of the training dataset can be downloaded here: CT dataset (1228 subjects) and MR dataset (616 subjects). You can also try the tool online at totalsegmentator.com or as 3D Slicer extension.
ANNOUNCEMENT: We created a platform where anyone can help annotate more data to further improve TotalSegmentator: TotalSegmentator Annotation Platform.
ANNOUNCEMENT: We created web applications for abdominal organ volume, Evans index, and aorta diameter.
TotalSegmentator supports a lot more structures. See subtasks or here for more details.
Daily snapshots
Stars gained per day, and how forks and open issues moved, from GStars' daily snapshots
Forks
491+24
Open issues
88+21
Compared with peers in Backend
Fastest-growing repositories GStars tracks in this cohort for the week of Nov 1, by 7-day star growth
| Repository | Stars | +7d | Health | Last release |
|---|---|---|---|---|
| anthropics/skills | 187.8K | +2.9K | 15 | — |
| DuarteSantos8/openGym | 19.7K | +2.4K | 60 | 2 days ago |
| shiyu-coder/Kronos | 47.0K | +2.3K | 16 | — |
| NationalSecurityAgency/ghidra | 98.2K | +2.3K | 64 | 14 days ago |
| microsoft/VibeVoice | 56.0K | +1.1K | 29 | — |
| wasserth/TotalSegmentator | 3.1K | — | 51 | 56 days ago |
| Category median | 56.0K | +2.3K | 29 | — |
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